Build modified streamline images

The official image from streamline does not currently work for the arm64
platform. As a temporary measure, the source code and docker build scripts
have been lifted from the official images and are used to build locally.

Some additional modifications are made to reduce overall image size, these
are documented in docker/README.md

docker/streamline-src/public/uploads/.gitignore

@@ -0,0 +1,8 @@
+message_board
+messageboard
+resources
+images
+insurance_members
+hospital_resources
+csv_imports
+users

docker/streamline-src/public/uploads/lab_machine_scripts/kisiizi/main.py

@@ -0,0 +1,55 @@
+import json
+import socket
+
+import requests
+
+HOST = "192.168.1.215"  # Standard loopback interface address (localhost)
+PORT = 5100  # Port to listen on (non-privileged ports are > 1023)
+
+bytes_to_decode = b''
+
+with socket.socket(socket.AF_INET, socket.SOCK_STREAM) as s:
+    s.bind((HOST, PORT))
+    s.listen()
+    conn, addr = s.accept()
+
+    with conn:
+        # print(f"Connected by {addr}")
+
+        while True:
+            data = conn.recv(1024)
+
+            if data:
+                bytes_to_decode += data
+
+                if 'END_RESULT' in data.decode():
+                    results_dict = {}
+                    decoded_data = bytes_to_decode.decode()
+
+                    data_lists = [line.split(";") for line in decoded_data.split("\r\n")]
+                    data_list = []
+
+                    for row in data_lists:
+                        if row[0] in ['SID', 'PID', 'ID']:
+                            results_dict[row[0]] = row[1]
+                        elif row[0] in ['WBC', 'LYMP', 'MONP', 'NEUP', 'EOSP', 'BASP', 'IMMP', 'ALYP', 'LYM', 'RDW-SD',
+                                        'MON', 'NEU', 'EOS', 'BAS', 'IMM', 'ALY', 'RBC', 'HGB', 'HCT', 'MCV', 'MCH',
+                                        'MCHC', 'RDW-CV', 'PLCR', 'PDW', 'PCT', 'MPV', 'PLT']:
+                            try:
+                                flag = row[3]
+                            except:
+                                flag = ''
+
+                            try:
+                                result = row[1]
+                            except:
+                                result = ''
+
+                            data_list.append([row[0], result, flag])
+
+                    results_dict["results"] = json.dumps(data_list)
+
+                    requests.post('http://192.168.1.215/lab_machines/receive_results_mispa', data=results_dict)
+
+                    bytes_to_decode = b''
+

docker/streamline-src/public/uploads/lab_machine_scripts/kisiizi/restart_lis.py

@@ -0,0 +1,25 @@
+from subprocess import check_output, Popen, PIPE, STDOUT
+import os
+
+file_path = "/var/www/streamline/public/uploads/lab_machine_scripts/kisiizi/main.py"
+
+try:
+    # get the pid of the last process running with python3
+    pid_list = check_output(["pidof", "python3"]).split()
+
+    # iterate over the list of related pids
+    for pid in pid_list:
+        decoded_pid = pid.decode("utf-8")
+        file_path_from_pid = check_output(["ps", "-o", "cmd", decoded_pid]).split()[2].decode("utf-8")
+
+        if file_path_from_pid == file_path:
+            # kill the process with this path
+            delete_pid = check_output(["kill", "-9", decoded_pid])
+            break
+
+    # start a new process
+    os.system("nohup python3 " + file_path + " >/dev/null 2>&1 & ")
+    print(1)
+
+except Exception as e:
+    print(e)

docker/streamline-src/public/uploads/nutrition_csv_lookup/female_120_228.csv

@@ -0,0 +1,108 @@
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docker/streamline-src/public/uploads/nutrition_csv_lookup/female_60_120.csv

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docker/streamline-src/public/uploads/nutrition_csv_lookup/female_6_60.csv

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docker/streamline-src/public/uploads/nutrition_csv_lookup/male_120_228.csv

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